11/1/2023 0 Comments Oasis spikeThe specific points in history marking the time of the publications have been tagged. The results of fig4 and table1 will be even better than in the paper, because the version in the master branch includes later improvements, in particularly up to an order of magnitude less computing time. They can be run with ipython examples/fig.py. The scripts to produce the figures and table are in the subfolder 'examples' with names obvious from the PLoS Comput Biol paper. To clean up temporary files follow it by: (If the compilation fails on Windows, see Srikanth's gist.) Following the cython online docs, for the time being, it is just a warning that you can ignore.) (Ignore the warnings that Cython is using a deprecated Numpy API. And install the requirements either using pip:Ĭonda install -file requirements.txt (or mamba install -file requirements.txt)įor faster execution some functions have been written in Cython and need to be compiled by running:
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